Basic Information
Locus ID:
Pt_Chr0300784
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 18497046 | 18502053 | - | Pt_Chr0300784 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 62,497.35 Da | 35.10 | 98.11 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 428 | 528 | 9.94607E-25 | - |
| CDD | cd00030 | C2 | 256 | 358 | 1.54123E-27 | - |
| Pfam | PF00168 | C2 domain | 254 | 358 | 9.0E-24 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 241 | 7.4E-12 | IPR039010 |
| Pfam | PF00168 | C2 domain | 426 | 528 | 7.9E-27 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 252 | 384 | 1.42E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 424 | 544 | 1.12E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 411 | 544 | 5.0E-37 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 250 | 391 | 6.3E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 255 | 355 | 9.4E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 427 | 525 | 2.9E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 408 | 526 | 22.281532 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 235 | 356 | 22.111092 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 241 | 23.672005 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 491 | 499 | 4.1E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 469 | 482 | 4.1E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 443 | 455 | 4.1E-8 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_047065960.1 | synaptotagmin-5-like [Lolium rigidum] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6XHS1 | Synaptotagmin-5 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology