Basic Information
Locus ID:
Pt_Chr0300664
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
DWNN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 14592207 | 14593388 | + | Pt_Chr0300664 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 41,423.54 Da | 56.49 | 54.81 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 198 | 239 | 6.64614E-11 | - |
| Pfam | PF13696 | Zinc knuckle | 152 | 171 | 7.6E-9 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 3 | 81 | 2.2E-18 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 195 | 264 | 7.88E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 203 | 264 | 2.3E-5 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 149 | 202 | 1.1E-9 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 85 | 3.2E-18 | - |
| SMART | SM01180 | DWNN_2 | 3 | 82 | 2.2E-30 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 3 | 82 | 16.645096 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 117 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_047080378.1 | E3 ubiquitin ligase PQT3-like [Lolium rigidum] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | F2E1Q0 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology