Basic Information
Locus ID:
Pt_Chr0300624
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 13783167 | 13788224 | - | Pt_Chr0300624 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 53,001.43 Da | 41.65 | 108.37 | 0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01699 | Sodium/calcium exchanger protein | 307 | 446 | 9.8E-21 | IPR004837 |
| Pfam | PF01699 | Sodium/calcium exchanger protein | 117 | 272 | 3.6E-20 | IPR004837 |
| Gene3D | G3DSA:1.20.1420.30 | - | 293 | 450 | 4.2E-19 | IPR044880 |
| Gene3D | G3DSA:1.20.1420.30 | - | 146 | 286 | 9.1E-15 | IPR044880 |
| TIGRFAM | TIGR00378 | cax: calcium/proton exchanger | 98 | 449 | 7.1E-104 | IPR004798 |
| TIGRFAM | TIGR00846 | caca2: calcium/proton exchanger | 82 | 449 | 4.7E-119 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55730.1 | cation exchanger 5. member of Low affinity calcium antiporter CAX2 family | 0 |
| RefSeq | XP_047065731.1 | vacuolar cation/proton exchanger 3 [Lolium rigidum] | 0 |
| Q6K1C4 | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CAX3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A453D6V0 | Vacuolar cation/proton exchanger OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology