Basic Information
Locus ID:
Pt_Chr0300620
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 13725749 | 13728052 | + | Pt_Chr0300620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 62,135.20 Da | 51.15 | 87.88 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 89 | 1.46E-6 | IPR011333 |
| Gene3D | G3DSA:6.10.250.3030 | - | 89 | 145 | 1.4E-8 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 190 | 266 | 6.1E-18 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 9 | 88 | 3.9E-8 | IPR011333 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 270 | 284 | 9.026372 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 324 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G21010.1 | BTB-POZ and MATH domain 5. | 0 |
| RefSeq | XP_047055237.1 | BTB/POZ and MATH domain-containing protein 1-like [Lolium rigidum] | 0 |
| Q1EBV6 | BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=BPM5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PUT6 | BTB domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0505280.1 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300620, Pt_Chr0501214 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G689100, Tel6E01G793000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG055630, gene_TRIDC3BG073430 ... |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G419800.1.cds1, TraesCS6B02G470400.1.cds1 |