Basic Information
Locus ID:
Pt_Chr0300465
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 9482680 | 9493463 | - | Pt_Chr0300465 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 57,196.06 Da | 55.20 | 67.54 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 142 | 194 | 1.59876E-30 | - |
| Pfam | PF12315 | Protein DA1 | 291 | 499 | 1.8E-102 | IPR022087 |
| Pfam | PF00412 | LIM domain | 142 | 197 | 3.5E-8 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 169 | 223 | 1.22E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 134 | 167 | 3.86E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 136 | 216 | 6.7E-15 | - |
| SMART | SM00726 | uim | 46 | 65 | 0.12 | IPR003903 |
| SMART | SM00726 | uim | 77 | 96 | 0.067 | IPR003903 |
| SMART | SM00132 | lim_4 | 141 | 193 | 2.2E-10 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 140 | 200 | 11.9593 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 77 | 96 | 9.737266 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 46 | 65 | 8.959044 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 142 | 176 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 123 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_047095143.1 | protein DA1-related 1-like [Lolium rigidum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8S0NBR1 | Protein DA1-related 1-like OS=Lolium multiflorum OX=4521 GN=LmDA1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology