Basic Information
Locus ID:
Pt_Chr0300436
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 8956095 | 8957456 | - | Pt_Chr0300436 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 51,554.15 Da | 62.45 | 93.40 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 416 | 453 | 1.1E-4 | IPR006566 |
| Pfam | PF00646 | F-box domain | 10 | 42 | 2.0E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 48 | 4.97E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 157 | 369 | 1.31E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 132 | 384 | 1.8E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 46 | 3.5E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 43 | 10.504256 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38392.1 | - | 0 |
| RefSeq | XP_051197315.1 | F-box/FBD/LRR-repeat protein At1g16930-like [Lolium perenne] | 0 |
| Q9FZ52 | F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana OX=3702 GN=At1g16930 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6CE29 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH09.469 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0114340, gene-QOZ80_7AG0567720 |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.2HG0106580.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 21 | gene-QYE76_018842, gene-QYE76_019819, gene-QYE76_026969 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os04g19750.1, LOC_Os04g19800.1 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0300408, Pt_Chr0300410, Pt_Chr0300436, Pt_Chr0305599 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G009210 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G829000, Tel2E01G830300, Tel2E01G830500 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC2AG008370, gene_TRIDC2AG068980 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G489900.1.cds1, TraesCS2B02G090000.1 ... |