Basic Information
Locus ID:
Pt_Chr0300409
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 8491625 | 8493025 | + | Pt_Chr0300409 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 52,860.48 Da | 59.28 | 99.16 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 166 | 372 | 1.46E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 53 | 2.49E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 51 | 2.8E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 78 | 403 | 2.6E-11 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13780.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_051219558.1 | F-box/FBD/LRR-repeat protein At1g13780-like [Lolium perenne] | 0 |
| Q56XS8 | F-box/FBD/LRR-repeat protein At1g13780 OS=Arabidopsis thaliana OX=3702 GN=At1g13780 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6CDY4 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology