Basic Information
Locus ID:
Pt_Chr0300408
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 8489878 | 8491392 | - | Pt_Chr0300408 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 56,394.75 Da | 56.38 | 89.03 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 46 | 5.2E-4 | IPR001810 |
| Pfam | PF08387 | FBD | 435 | 471 | 9.5E-6 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 53 | 4.58E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 161 | 379 | 7.85E-15 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 50 | 5.4E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 121 | 384 | 3.0E-14 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 47 | 10.10684 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 407 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22670.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_051212028.1 | F-box/FBD/LRR-repeat protein At2g26030-like [Lolium perenne] | 0 |
| Q9FNJ4 | Putative F-box/FBD/LRR-repeat protein At5g22670 OS=Arabidopsis thaliana OX=3702 GN=At5g22670 PE=4 SV=1 | 0 | |
| TrEMBL | A0A3B6DNX6 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH09.469 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0114340, gene-QOZ80_7AG0567720 |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.2HG0106580.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 21 | gene-QYE76_018842, gene-QYE76_019819, gene-QYE76_026969 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os04g19750.1, LOC_Os04g19800.1 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0300408, Pt_Chr0300410, Pt_Chr0300436, Pt_Chr0305599 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G009210 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G829000, Tel2E01G830300, Tel2E01G830500 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC2AG008370, gene_TRIDC2AG068980 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G489900.1.cds1, TraesCS2B02G090000.1 ... |