Basic Information
Locus ID:
Pt_Chr0300296
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 6541807 | 6542624 | + | Pt_Chr0300296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 27,738.49 Da | 41.91 | 100.16 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 4 | 110 | 2.91978E-13 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 159 | 205 | 2.8E-4 | IPR000210 |
| Pfam | PF00917 | MATH domain | 30 | 111 | 4.8E-5 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 13 | 116 | 1.6E-18 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 115 | 205 | 7.32E-10 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 156 | 231 | 3.7E-12 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 2 | 114 | 2.0E-19 | IPR008974 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 1 | 109 | 11.032505 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.2 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_051199020.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium perenne] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7H4LP89 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS5059 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300296, Pt_Chr0302689 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG007040 |