Basic Information
Locus ID:
Pt_Chr0300142
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 3059632 | 3076949 | + | Pt_Chr0300142 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 124,650.72 Da | 41.88 | 75.03 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 197 | 523 | 8.22372E-163 | - |
| CDD | cd00121 | MATH | 56 | 179 | 2.11031E-37 | IPR002083 |
| CDD | cd17039 | Ubl_ubiquitin_like | 592 | 630 | 0.00729468 | - |
| Pfam | PF00917 | MATH domain | 61 | 181 | 8.8E-17 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 199 | 518 | 1.3E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 871 | 1032 | 7.4E-41 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 622 | 861 | 1.4E-59 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 52 | 188 | 2.45E-38 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 194 | 550 | 1.18E-96 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 788 | 884 | 8.6E-26 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 51 | 195 | 1.7E-49 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 196 | 522 | 2.3E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 656 | 772 | 4.2E-42 | - |
| SMART | SM00061 | math_3 | 56 | 160 | 1.5E-18 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 54 | 179 | 36.474159 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 199 | 521 | 39.559662 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 200 | 215 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 437 | 454 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| Coils | Coil | Coil | 537 | 561 | - | - |
| Coils | Coil | Coil | 1070 | 1074 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_047060449.1 | ubiquitin C-terminal hydrolase 13-like isoform X3 [Lolium rigidum] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6X8E7 | ubiquitinyl hydrolase 1 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology