Basic Information
Locus ID:
Pt_Chr0300140
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 2873456 | 2874919 | + | Pt_Chr0300140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 53,890.04 Da | 32.17 | 87.39 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 218 | 2.6E-39 | IPR001574 |
| Pfam | PF00651 | BTB/POZ domain | 302 | 410 | 2.3E-16 | IPR000210 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 8 | 267 | 8.64E-35 | IPR036041 |
| SUPERFAMILY | SSF54695 | POZ domain | 301 | 410 | 6.28E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 293 | 407 | 3.6E-22 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 414 | 484 | 8.0E-15 | - |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 183 | 288 | 3.4E-15 | IPR016139 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 182 | 5.9E-44 | IPR016138 |
| SMART | SM00225 | BTB_4 | 302 | 413 | 2.1E-16 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 302 | 370 | 14.418399 | IPR000210 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_051195067.1 | protein synthesis inhibitor I-like [Lolium perenne] | 0 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TJN1 | rRNA N-glycosidase OS=Setaria viridis OX=4556 GN=SEVIR_8G160500v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology