Basic Information
Locus ID:
Pt_Chr0300096
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 2011637 | 2013103 | - | Pt_Chr0300096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 53,762.26 Da | 30.58 | 88.79 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 224 | 5.8E-38 | IPR001574 |
| Pfam | PF00651 | BTB/POZ domain | 304 | 411 | 6.2E-16 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 303 | 411 | 3.45E-18 | IPR011333 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 8 | 241 | 1.57E-32 | IPR036041 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 189 | 293 | 3.7E-14 | IPR016139 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 188 | 4.5E-42 | IPR016138 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 294 | 408 | 1.0E-22 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 415 | 487 | 4.3E-14 | - |
| SMART | SM00225 | BTB_4 | 304 | 414 | 1.0E-14 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 304 | 371 | 14.583856 | IPR000210 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_051195067.1 | protein synthesis inhibitor I-like [Lolium perenne] | 0 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TJN1 | rRNA N-glycosidase OS=Setaria viridis OX=4556 GN=SEVIR_8G160500v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology