Basic Information
Locus ID:
Pt_Chr0300088
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 1773864 | 1775952 | + | Pt_Chr0300088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 27,308.37 Da | 30.83 | 91.85 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 144 | 234 | 6.98E-5 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 142 | 240 | 2.6E-8 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_015636561.1 | receptor protein kinase TMK1 [Oryza sativa Japonica Group] | 0 |
| Q2R560 | Receptor protein kinase WSS1 OS=Oryza sativa subsp. japonica OX=39947 GN=WSS1 PE=1 SV=1 | 0 | |
| TrEMBL | A3AYU2 | OSJNBa0070M12.3 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0685900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah035048 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G003140 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29654.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19770.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g043510.2N, BniB06g049840.2N, BniB07g004410.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq07G0586, Ceq07G0670, Ceq07G0689 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0667, Cgl07G0681 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300088 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44088 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12693 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19761 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.734 |