Basic Information
Locus ID:
Pt_Chr0300006
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 145421 | 148011 | - | Pt_Chr0300006 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 44,709.94 Da | 46.81 | 90.33 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 130 | 351 | 1.3E-48 | IPR000719 |
| Pfam | PF00168 | C2 domain | 3 | 60 | 1.9E-6 | IPR000008 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 103 | 382 | 2.97E-72 | IPR011009 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 3 | 74 | 2.08E-11 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2 | 95 | 1.8E-9 | IPR035892 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 107 | 202 | 1.1E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 222 | 392 | 4.5E-46 | - |
| SMART | SM00220 | serkin_6 | 129 | 386 | 9.9E-38 | IPR000719 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 1 | 70 | 10.272556 | IPR000008 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 129 | 398 | 37.474194 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 265 | 277 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 135 | 158 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11350.1 | S-domain-1 13. | 0 |
| RefSeq | XP_044394596.1 | leucine-rich repeat receptor protein kinase EMS1-like [Triticum aestivum] | 0 |
| O65405 | Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana OX=3702 GN=CRK28 PE=3 SV=2 | 0 | |
| TrEMBL | A0A3B6MJ91 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB08g075440.2N |
| Poaceae | Echinochloa crus-galli | 6 | BH05.3487, BH05.3770, BH06.1905, BH06.1907, CH05.3630 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0355810 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0214170.1, HORVU.MOREX.r3.2HG0214180.1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_008823, gene-QYE76_008829, gene-QYE76_008831 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_08G101700, gene-BS78_10G170000 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0106506, Pt_Chr0106736, Pt_Chr0300006, Pt_Chr0307037 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G070800, Tel2E01G985800, Tel3E01G183300 |
| Poaceae | Triticum dicoccoides | 12 | gene_TRIDC2AG004670, gene_TRIDC2AG079400 ... |
| Poaceae | Triticum aestivum | 20 | TraesCS1D02G031300.1, TraesCS2A02G024200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb390200_P001 |