Basic Information
Locus ID:
Pt_Chr0207609
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
MSP (Major sperm protein) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 251323281 | 251344059 | + | Pt_Chr0207609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 115,575.64 Da | 53.27 | 87.16 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 31 | 296 | 2.8E-51 | IPR000719 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 331 | 431 | 4.9E-16 | IPR000535 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 871 | 962 | 9.9E-7 | IPR000535 |
| SUPERFAMILY | SSF49354 | PapD-like | 868 | 967 | 1.47E-9 | IPR008962 |
| SUPERFAMILY | SSF49354 | PapD-like | 323 | 449 | 2.78E-24 | IPR008962 |
| SUPERFAMILY | SSF49354 | PapD-like | 617 | 718 | 4.45E-9 | IPR008962 |
| SUPERFAMILY | SSF49354 | PapD-like | 742 | 860 | 4.97E-9 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 15 | 303 | 8.63E-71 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 491 | 610 | 2.62E-7 | IPR008962 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 488 | 607 | 3.6E-7 | IPR013783 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 863 | 987 | 4.3E-13 | IPR013783 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 11 | 104 | 9.7E-26 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 325 | 451 | 3.4E-26 | IPR013783 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 613 | 736 | 9.2E-12 | IPR013783 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 124 | 323 | 5.2E-51 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 738 | 860 | 1.8E-12 | IPR013783 |
| SMART | SM00220 | serkin_6 | 31 | 306 | 9.1E-38 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 734 | 861 | 10.581457 | IPR000535 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 495 | 610 | 9.357488 | IPR000535 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 870 | 987 | 12.788974 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 31 | 304 | 36.286938 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 329 | 449 | 19.630089 | IPR000535 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 609 | 743 | 10.996733 | IPR000535 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 37 | 58 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 165 | 177 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21410.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 29. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_045089952.1 | uncharacterized protein LOC109778399 [Aegilops tauschii subsp. strangulata] | 0 |
| Q8S9L6 | Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana OX=3702 GN=CRK29 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453GYS7 | Protein kinase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_048481, gene-QYE76_048490, gene-QYE76_048496 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205790, Pt_Chr0207609 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G916100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3BG014440 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G103500.2, TraesCS4A02G309200.1 |