Basic Information
Locus ID:
Pt_Chr0207590
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 251010515 | 251016344 | + | Pt_Chr0207590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 37,274.88 Da | 36.66 | 75.84 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 39 | 212 | 3.4E-53 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 28 | 135 | 7.1E-27 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 137 | 210 | 3.4E-22 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 310 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38930.1 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_051220894.1 | uncharacterized protein LOC127339030 [Lolium perenne] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A077RPZ5 | PDZ domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF264600010CFD_c1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology