Basic Information
Locus ID:
Pt_Chr0207543
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 246588506 | 246598770 | - | Pt_Chr0207543 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 105,139.71 Da | 54.73 | 75.04 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 249 | 365 | 1.8045E-19 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 254 | 365 | 6.8E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 706 | 767 | 2.1E-6 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 133 | 391 | 1.4E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 832 | 906 | 9.92E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 705 | 769 | 6.28E-10 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 133 | 393 | 1.3E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 827 | 909 | 1.9E-6 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 701 | 772 | 3.4E-7 | - |
| SMART | SM00358 | DRBM_3 | 704 | 768 | 2.7E-6 | IPR014720 |
| SMART | SM00577 | forpap2 | 200 | 374 | 1.8E-14 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 831 | 898 | 0.0076 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 830 | 899 | 10.678736 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 139 | 390 | 16.795328 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 703 | 769 | 11.698341 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 550 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_051193611.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Lolium perenne] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6YV96 | protein-serine/threonine phosphatase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology