Basic Information
Locus ID:
Pt_Chr0207448
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 243026747 | 243038388 | - | Pt_Chr0207448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 136,842.95 Da | 45.12 | 83.78 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 214 | 334 | 3.24054E-33 | IPR002083 |
| Pfam | PF00917 | MATH domain | 217 | 335 | 2.9E-15 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 966 | 1165 | 7.1E-41 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 726 | 882 | 4.7E-41 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 354 | 607 | 1.0E-35 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 885 | 957 | 1.7E-10 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 212 | 337 | 3.92E-35 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 351 | 651 | 3.53E-65 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 209 | 350 | 1.1E-43 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 786 | 894 | 4.6E-36 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 351 | 631 | 1.8E-57 | - |
| SMART | SM00061 | math_3 | 215 | 315 | 1.7E-18 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 354 | 642 | 30.30407 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 210 | 334 | 31.181271 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 585 | 602 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_037477165.1 | ubiquitin carboxyl-terminal hydrolase 12-like [Triticum dicoccoides] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6AYN8 | ubiquitinyl hydrolase 1 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Pt_Chr0207448.