Basic Information
Locus ID:
Pt_Chr0207382
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 241453297 | 241458186 | + | Pt_Chr0207382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.50 | 73,995.88 Da | 46.69 | 73.18 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 377 | 506 | 3.47994E-62 | - |
| CDD | cd00201 | WW | 16 | 45 | 0.0067495 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 183 | 352 | 3.7E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 390 | 497 | 5.0E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 230 | 513 | 4.27E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 10 | 48 | 1.36E-6 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 132 | 366 | 3.5E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 367 | 538 | 1.6E-57 | IPR027417 |
| SMART | SM00456 | ww_5 | 14 | 47 | 3.6E-4 | IPR001202 |
| SMART | SM00490 | helicmild6 | 417 | 497 | 3.5E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 177 | 380 | 6.9E-64 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 392 | 536 | 25.785728 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 158 | 186 | 10.960767 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 13 | 47 | 10.3837 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 189 | 363 | 31.553011 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 309 | 317 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 87 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_051222936.1 | DEAD-box ATP-dependent RNA helicase 14-like isoform X1 [Lolium perenne] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6GSM2 | DEAD-box ATP-dependent RNA helicase 14 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology