Basic Information
Locus ID:
Pt_Chr0206934
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 230026823 | 230030887 | + | Pt_Chr0206934 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 68,485.23 Da | 37.16 | 75.07 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 204 | 401 | 2.5785E-102 | - |
| CDD | cd18794 | SF2_C_RecQ | 402 | 535 | 9.45731E-64 | - |
| Pfam | PF16124 | RecQ zinc-binding | 538 | 607 | 5.3E-13 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 212 | 381 | 8.1E-17 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 421 | 524 | 6.7E-18 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 250 | 546 | 1.74E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 402 | 610 | 1.9E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 166 | 401 | 2.8E-85 | IPR027417 |
| SMART | SM00487 | ultradead3 | 206 | 410 | 9.5E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 444 | 526 | 1.7E-24 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 204 | 609 | 1.9E-155 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 423 | 566 | 18.779713 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 218 | 394 | 21.172514 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 333 | 342 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 178 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_047084830.1 | ATP-dependent DNA helicase Q-like 1 [Lolium rigidum] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453HUK5 | ATP-dependent DNA helicase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology