Basic Information
Locus ID:
Pt_Chr0206757
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 223392043 | 223392520 | + | Pt_Chr0206757 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 17,082.49 Da | 25.50 | 100.00 | 0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 2 | 95 | 1.1E-10 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 2 | 96 | 6.87E-13 | IPR011333 |
| Gene3D | G3DSA:6.10.250.3030 | - | 93 | 138 | 4.0E-6 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 92 | 1.3E-13 | IPR011333 |
| SMART | SM00225 | BTB_4 | 2 | 96 | 4.9E-6 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 2 | 64 | 9.371991 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_051221149.1 | uncharacterized protein LOC127339325 [Lolium perenne] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6N0Q2 | Speckle-type POZ protein-like protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0206757, Pt_Chr0604801, Pt_Chr0604803, Pt_Chr0604807 ... |