Basic Information
Locus ID:
Pt_Chr0206639
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 220183125 | 220187034 | - | Pt_Chr0206639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 42,580.63 Da | 44.94 | 76.47 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13424 | Tetratricopeptide repeat | 234 | 308 | 2.8E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 89 | 134 | 2.21E-8 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 226 | 360 | 3.8E-10 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 159 | 2.4E-9 | IPR013083 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 194 | 373 | 4.4E-15 | IPR011990 |
| SMART | SM00184 | ring_2 | 95 | 129 | 0.0017 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 95 | 129 | 11.486073 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 111 | 120 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 71 | - | - |
| Coils | Coil | Coil | 211 | 231 | - | - |
| Coils | Coil | Coil | 338 | 358 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54360.1 | zinc ion binding. | 0 |
| RefSeq | XP_047054265.1 | protein NCA1-like [Lolium rigidum] | 0 |
| Q9M2V1 | Protein NCA1 OS=Arabidopsis thaliana OX=3702 GN=NCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6GQN1 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15973, jg31284 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7107 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah006802, Ah006804 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g209770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12040, Sbi_jg46961 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21253 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009593 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80448, Sgl82909 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000008611, gene:ENSEOMG00000028892 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0014210, CQ.Regalona.r1.4AG0014280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168710 |
| Apiaceae | Apium graveolens | 1 | Ag2G00188 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G011990, COCNU_16G005190 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702200, gene-LOC103709685 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.781.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G21364, Ftri12G03745 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010421m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g08040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g057400.2N, BniB08g068610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0959 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0957 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g12190 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0024s00045.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g18080, gene.Thate08g13470 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8184 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2075 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006872 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12533, Lb2G12552 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.1089, AH04.338, BH02.1023, BH04.333, CH02.1131 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0006300, gene-QOZ80_1BG0055020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231430.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_049152, gene-QYE76_049638 |
| Poaceae | Oryza coarctata | 2 | Oco01G000230, Oco02G000230 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g01420.2, LOC_Os02g55200.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G095600, gene-BS78_05G057500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206639, Pt_Chr0206742 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G025520, Chr03G002610, Chr05G003250, Chr08G002460 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G142900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG009360, gene_TRIDC3BG013200 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G078500.1, TraesCS3B02G093400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb126920_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32362, nbis-gene-7207 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9799 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.652, evm.TU.LG09.1814 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g12580, gene.Posoc10g11460 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.133 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7226 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2367 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14452 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.310 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010292 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-283 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21996 |
| Salicaceae | Populus euphratica | 2 | populus_peu04167, populus_peu34998 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607379, gene-LOC132637098 |
| Solanaceae | Solanum chilense | 1 | SOLCI002815000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002385 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13021 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2437, TC06G0704 |
| Zosteraceae | Zostera marina | 1 | Zosma06g24400.v3.1 |