Basic Information
Locus ID:
Pt_Chr0206622
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 220041448 | 220043631 | - | Pt_Chr0206622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 66,763.82 Da | 49.28 | 85.69 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14733 | BACK | 550 | 578 | 0.00100867 | - |
| Pfam | PF00651 | BTB/POZ domain | 190 | 308 | 2.7E-23 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 445 | 546 | 1.1E-16 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 435 | 546 | 5.89E-18 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 34 | 154 | 6.54E-8 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 188 | 307 | 1.41E-24 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 18 | 153 | 1.2E-6 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 431 | 578 | 1.7E-32 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 166 | 308 | 1.2E-28 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 309 | 388 | 9.6E-13 | - |
| SMART | SM00225 | BTB_4 | 449 | 549 | 7.2E-14 | IPR000210 |
| SMART | SM00225 | BTB_4 | 196 | 309 | 7.6E-22 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 196 | 261 | 17.251833 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 449 | 517 | 13.611801 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_051220897.1 | uncharacterized protein LOC127339033 [Lolium perenne] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077S2Y0 | BTB domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF012500100CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0712650 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0219660.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_000351, gene-QYE76_018036, gene-QYE76_020460 ... |
| Poaceae | Puccinellia tenuiflora | 8 | Pt_Chr0100491, Pt_Chr0106602, Pt_Chr0206622, Pt_Chr0206755 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G840100 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG009110, gene_TRIDC3AG071980 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G009700.1.cds1, TraesCS3A02G076600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb418740_P001 |