Basic Information
Locus ID:
Pt_Chr0206584
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 219413129 | 219414755 | - | Pt_Chr0206584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 35,749.93 Da | 67.41 | 68.70 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 274 | 9.8E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 238 | 279 | 5.19E-9 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 198 | 284 | 9.9E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 236 | 275 | 9.8E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 276 | 10.891048 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 276 | 13.11507 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 262 | 276 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 91 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_047063464.1 | WD repeat-containing protein 44-like [Lolium rigidum] | 0 |
| TrEMBL | A0A3B6B9M0 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206500, Pt_Chr0206584 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG035100 |
| Poaceae | Triticum aestivum | 1 | TraesCS3B02G109400.1 |