Basic Information
Locus ID:
Pt_Chr0206500
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 217780739 | 217782366 | + | Pt_Chr0206500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 33,461.22 Da | 67.34 | 66.31 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 275 | 1.0E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 240 | 277 | 2.47E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 200 | 281 | 2.0E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 7.6E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 277 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 277 | 13.282162 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 263 | 277 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 207 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_003579484.1 | WD repeat-containing protein 44 [Brachypodium distachyon] | 0 |
| TrEMBL | A0A453DG97 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206500, Pt_Chr0206584 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG035100 |
| Poaceae | Triticum aestivum | 1 | TraesCS3B02G109400.1 |