Basic Information
Locus ID:
Pt_Chr0206292
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 209960613 | 209965799 | + | Pt_Chr0206292 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 91,428.66 Da | 69.67 | 53.47 | -1.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 370 | 398 | 5.2E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 404 | 431 | 5.9E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 363 | 399 | 4.71E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 362 | 400 | 4.7E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 401 | 432 | 6.0E-9 | - |
| SMART | SM00547 | zf_4 | 372 | 396 | 7.7E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 405 | 429 | 4.8E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 403 | 432 | 9.427498 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 370 | 399 | 9.969523 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 407 | 426 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 374 | 393 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 755 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 808 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 808 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 646 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 112 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_047080162.1 | uncharacterized protein LOC124690879 [Lolium rigidum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6NU10 | Zinc finger protein VAR3, chloroplastic OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology