Basic Information
Locus ID:
Pt_Chr0206282
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 209868111 | 209868980 | + | Pt_Chr0206282 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 32,111.10 Da | 31.78 | 87.44 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 28 | 151 | 7.4E-9 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 175 | 257 | 8.6E-6 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 21 | 282 | 1.67E-85 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 13 | 284 | 3.4E-97 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_047078302.1 | probable CCR4-associated factor 1 homolog 7 [Lolium rigidum] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | W5GUB4 | poly(A)-specific ribonuclease OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology