Basic Information
Locus ID:
Pt_Chr0206216
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 208325512 | 208342176 | + | Pt_Chr0206216 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 120,706.67 Da | 46.34 | 87.67 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18280 | BTB_POZ_BPM_plant | 920 | 1035 | 2.79406E-43 | - |
| CDD | cd00121 | MATH | 774 | 901 | 2.54903E-21 | IPR002083 |
| CDD | cd00121 | MATH | 414 | 538 | 7.76514E-18 | IPR002083 |
| CDD | cd00121 | MATH | 59 | 188 | 5.69391E-26 | IPR002083 |
| Pfam | PF00917 | MATH domain | 77 | 186 | 0.0024 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 567 | 678 | 1.2E-21 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 216 | 326 | 2.2E-23 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 925 | 1036 | 4.1E-23 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 410 | 546 | 9.97E-29 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 553 | 679 | 8.24E-28 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 55 | 193 | 8.18E-31 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 770 | 905 | 3.27E-30 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 203 | 328 | 2.55E-30 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 912 | 1038 | 5.1E-31 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 58 | 192 | 1.6E-25 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 551 | 675 | 2.6E-33 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 327 | 401 | 1.9E-19 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 201 | 323 | 1.7E-35 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 680 | 749 | 5.4E-18 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 910 | 1033 | 2.7E-35 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 1037 | 1101 | 3.1E-19 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 774 | 905 | 1.6E-25 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 414 | 542 | 1.6E-21 | IPR008974 |
| SMART | SM00225 | BTB_4 | 934 | 1038 | 2.2E-22 | IPR000210 |
| SMART | SM00225 | BTB_4 | 576 | 680 | 1.8E-21 | IPR000210 |
| SMART | SM00225 | BTB_4 | 225 | 328 | 2.5E-23 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 934 | 999 | 16.445236 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 58 | 188 | 17.373741 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 773 | 901 | 16.555517 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 576 | 645 | 15.680001 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 413 | 538 | 14.970208 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 225 | 287 | 16.962286 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_025876425.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC4348685 [Oryza sativa Japonica Group] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3HDW6 | BTB domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology