Basic Information
Locus ID:
Pt_Chr0205955
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 201262139 | 201269320 | + | Pt_Chr0205955 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 116,477.02 Da | 46.19 | 77.19 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 947 | 988 | 1.20689E-22 | - |
| CDD | cd01989 | STK_N | 11 | 160 | 7.88655E-33 | - |
| Pfam | PF00069 | Protein kinase domain | 668 | 863 | 2.4E-35 | IPR000719 |
| Pfam | PF04564 | U-box domain | 944 | 1013 | 3.4E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 937 | 1013 | 4.33E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 645 | 909 | 1.31E-54 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 13 | 123 | 5.53E-6 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 642 | 737 | 6.5E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 941 | 1016 | 3.0E-26 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 12 | 143 | 1.1E-7 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 738 | 930 | 5.8E-38 | - |
| SMART | SM00220 | serkin_6 | 665 | 922 | 1.4E-13 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 946 | 1009 | 5.4E-27 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 665 | 922 | 30.138647 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 942 | 1016 | 30.475203 | IPR003613 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 671 | 692 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 783 | 795 | - | IPR008271 |
| Coils | Coil | Coil | 68 | 88 | - | - |
| Coils | Coil | Coil | 604 | 631 | - | - |
| Coils | Coil | Coil | 483 | 524 | - | - |
| Coils | Coil | Coil | 384 | 418 | - | - |
| Coils | Coil | Coil | 561 | 588 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_051193417.1 | U-box domain-containing protein 33-like [Lolium perenne] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6QIW1 | E3 ubiquitin ligase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2922, BH07.2744, CH07.2816 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0140170, gene-QOZ80_2BG0195840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0602150.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G017570, Oco04G018320 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G223200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205955 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G024000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG037900 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G245400.1, TraesCS6D02G227800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb186880_P001 |