Basic Information
Locus ID:
Pt_Chr0205954
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 201250405 | 201260967 | + | Pt_Chr0205954 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 194,046.48 Da | 54.63 | 79.02 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 906 | 1047 | 2.87757E-30 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 755 | 796 | 3.81339E-23 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1645 | 1686 | 3.44217E-22 | - |
| CDD | cd01989 | STK_N | 36 | 191 | 1.29605E-47 | - |
| Pfam | PF04564 | U-box domain | 1642 | 1712 | 3.2E-17 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1361 | 1441 | 4.1E-13 | IPR001245 |
| Pfam | PF00582 | Universal stress protein family | 35 | 169 | 2.7E-6 | IPR006016 |
| Pfam | PF04564 | U-box domain | 752 | 822 | 7.3E-16 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 470 | 675 | 5.4E-36 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 1486 | 1583 | 7.0E-13 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1342 | 1613 | 1.93E-43 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1638 | 1714 | 2.65E-23 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 36 | 164 | 1.67E-10 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 461 | 725 | 2.19E-55 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 744 | 823 | 1.24E-21 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 448 | 534 | 3.3E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1640 | 1717 | 9.5E-28 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1481 | 1627 | 3.3E-26 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 35 | 182 | 1.8E-10 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1341 | 1455 | 1.5E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 750 | 826 | 3.1E-26 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 548 | 730 | 4.4E-42 | - |
| SMART | SM00220 | serkin_6 | 467 | 729 | 3.2E-24 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 1644 | 1707 | 5.6E-27 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 754 | 817 | 7.7E-26 | IPR003613 |
| SMART | SM00220 | serkin_6 | 1356 | 1614 | 1.3E-11 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1640 | 1714 | 31.492458 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 750 | 824 | 32.023201 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 467 | 729 | 34.279911 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1356 | 1620 | 22.492153 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1362 | 1383 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 581 | 593 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 473 | 494 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1463 | 1486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 308 | - | - |
| Coils | Coil | Coil | 1140 | 1202 | - | - |
| Coils | Coil | Coil | 382 | 465 | - | - |
| Coils | Coil | Coil | 1246 | 1332 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_051193418.1 | LOW QUALITY PROTEIN: U-box domain-containing protein 33-like [Lolium perenne] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0NIX1 | RING-type E3 ubiquitin transferase OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology