Basic Information
Locus ID:
Pt_Chr0205824
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
von Willebrand factor (vWF) type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 195440628 | 195452136 | + | Pt_Chr0205824 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 94,181.12 Da | 40.54 | 80.41 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00198 | vWFA | 276 | 430 | 2.76957E-5 | - |
| CDD | cd00198 | vWFA | 748 | 822 | 7.60294E-4 | - |
| Pfam | PF00069 | Protein kinase domain | 2 | 242 | 1.6E-36 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 244 | 5.66E-51 | IPR011009 |
| SUPERFAMILY | SSF53300 | vWA-like | 280 | 429 | 4.79E-5 | IPR036465 |
| SUPERFAMILY | SSF53300 | vWA-like | 748 | 844 | 2.05E-6 | IPR036465 |
| SUPERFAMILY | SSF53300 | vWA-like | 478 | 624 | 4.28E-7 | IPR036465 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 268 | 7.3E-54 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 506 | 631 | 1.3E-7 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 713 | 843 | 7.0E-6 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 321 | 437 | 1.7E-6 | IPR036465 |
| SMART | SM00220 | serkin_6 | 6 | 251 | 2.7E-11 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 247 | 29.191669 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 89 | 101 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03230.3 | - | 0 |
| RefSeq | XP_044438347.1 | uncharacterized protein LOC123164820 [Triticum aestivum] | 0 |
| Q9ZR08 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana OX=3702 GN=At4g03230 PE=3 SV=3 | 0 | |
| TrEMBL | A0A3B6SSM3 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH04.2110 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0095880.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_05G188400, gene-BS78_05G188600, gene-BS78_K280100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205824 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G009600, Tel2E01G010800, Tel7E01G005600 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG000300, gene_TRIDC2BG000030 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS2A02G003000.1, TraesCS2B02G000200.1 ... |