Basic Information
Locus ID:
Pt_Chr0205790
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
MSP (Major sperm protein) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 194891490 | 194917159 | - | Pt_Chr0205790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 103,370.03 Da | 52.43 | 89.36 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00635 | MSP (Major sperm protein) domain | 326 | 426 | 6.7E-16 | IPR000535 |
| Pfam | PF00069 | Protein kinase domain | 31 | 291 | 2.8E-49 | IPR000719 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 767 | 858 | 8.5E-7 | IPR000535 |
| SUPERFAMILY | SSF49354 | PapD-like | 764 | 863 | 1.26E-9 | IPR008962 |
| SUPERFAMILY | SSF49354 | PapD-like | 318 | 444 | 3.4E-24 | IPR008962 |
| SUPERFAMILY | SSF49354 | PapD-like | 486 | 605 | 2.25E-7 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 15 | 298 | 2.7E-69 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 124 | 318 | 7.9E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 11 | 104 | 8.3E-26 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 759 | 883 | 3.6E-13 | IPR013783 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 483 | 602 | 3.1E-7 | IPR013783 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 320 | 446 | 3.1E-26 | IPR013783 |
| SMART | SM00220 | serkin_6 | 31 | 301 | 1.4E-37 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 490 | 605 | 9.357488 | IPR000535 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 324 | 444 | 19.870512 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 31 | 299 | 35.707443 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 766 | 883 | 12.788974 | IPR000535 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 37 | 58 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 165 | 177 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21410.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 29. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_044352258.1 | uncharacterized protein LOC123072711 isoform X2 [Triticum aestivum] | 0 |
| Q8S9L6 | Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana OX=3702 GN=CRK29 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453GYS7 | Protein kinase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_048481, gene-QYE76_048490, gene-QYE76_048496 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205790, Pt_Chr0207609 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G916100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3BG014440 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G103500.2, TraesCS4A02G309200.1 |