Basic Information
Locus ID:
Pt_Chr0205659
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 192027383 | 192031410 | + | Pt_Chr0205659 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 51,956.84 Da | 35.42 | 96.03 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 227 | 325 | 5.6E-25 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 182 | 419 | 2.91E-42 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 174 | 222 | 1.4E-6 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 3 | 122 | 2.2E-19 | IPR036537 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 223 | 407 | 1.7E-42 | - |
| SMART | SM00220 | serkin_6 | 199 | 399 | 4.8E-8 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 51 | 405 | 19.114128 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 244 | 256 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23180.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_039823759.1 | putative receptor-like protein kinase At4g00960 [Panicum virgatum] | 0 |
| Q8GYA4 | Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CRK10 PE=1 SV=3 | 0 | |
| TrEMBL | K3ZII6 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH04.2149, AH04.2150, AH06.444, BH04.2209, CH09.212 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0390620, gene-QOZ80_8AG0629730 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0315350.1, HORVU.MOREX.r3.3HG0315360.1 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os12g14480.1, LOC_Os12g14610.1, LOC_Os12g14699.1 |
| Poaceae | Paspalum vaginatum | 16 | gene-BS78_05G233500, gene-BS78_05G233900, gene-BS78_K259300 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205570, Pt_Chr0205659 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr27G005670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G066400 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3BG074570 |
| Poaceae | Triticum aestivum | 4 | TraesCS1B02G036700.1, TraesCS1D02G030000.2 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25837, Zma_g25838 |