Basic Information
Locus ID:
Pt_Chr0205493
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 187625061 | 187633388 | + | Pt_Chr0205493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 79,696.67 Da | 45.72 | 74.46 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 350 | 477 | 6.22288E-31 | IPR033734 |
| CDD | cd09612 | Jacalin | 614 | 730 | 5.51878E-32 | IPR033734 |
| CDD | cd09612 | Jacalin | 158 | 274 | 2.77764E-28 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 153 | 276 | 5.2E-15 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 608 | 730 | 3.7E-16 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 357 | 477 | 1.7E-15 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 591 | 729 | 1.07E-33 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 338 | 477 | 4.32E-32 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 136 | 275 | 2.09E-29 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 134 | 279 | 7.1E-35 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 589 | 732 | 1.7E-40 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 336 | 478 | 6.5E-39 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 602 | 731 | 6.0E-18 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 350 | 479 | 1.8E-6 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 149 | 277 | 3.1E-6 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 136 | 277 | 27.141346 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 339 | 480 | 30.330273 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 591 | 731 | 33.031483 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_051222744.1 | jacalin-related lectin 3-like [Lolium perenne] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6FK34 | Jacalin-type lectin domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology