Basic Information
Locus ID:
Pt_Chr0205468
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 186902867 | 186910631 | - | Pt_Chr0205468 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 152,698.31 Da | 46.38 | 104.98 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1141 | 1361 | 1.26212E-119 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 207 | 494 | 4.03065E-81 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 824 | 1118 | 1.53463E-81 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 520 | 720 | 1.52057E-107 | - |
| Pfam | PF00005 | ABC transporter | 1160 | 1308 | 7.6E-27 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 206 | 473 | 4.9E-23 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 538 | 672 | 1.5E-22 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 826 | 1070 | 1.5E-25 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 514 | 741 | 2.08E-58 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 824 | 1125 | 3.4E-46 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1135 | 1374 | 7.5E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 200 | 501 | 3.66E-33 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1126 | 1379 | 2.3E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 196 | 502 | 7.2E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 503 | 753 | 2.5E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 789 | 1124 | 4.9E-53 | IPR036640 |
| SMART | SM00382 | AAA_5 | 547 | 720 | 1.7E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1169 | 1354 | 4.9E-10 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 520 | 743 | 23.502838 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1143 | 1377 | 17.427105 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 206 | 486 | 30.772259 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 826 | 1106 | 32.683167 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 645 | 659 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_047045687.1 | ABC transporter C family member 3-like [Lolium rigidum] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452ZEJ7 | ABC transporter C family member 3 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology