Basic Information
Locus ID:
Pt_Chr0205422
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Type III restriction enzyme, res subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 185919440 | 185926036 | + | Pt_Chr0205422 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 147,054.06 Da | 63.63 | 63.85 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 813 | 942 | 3.0542E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 825 | 933 | 1.2E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 607 | 788 | 5.5E-44 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 655 | 949 | 7.04E-71 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 17 | 53 | 2.45E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 557 | 803 | 1.1E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 804 | 975 | 2.1E-57 | IPR027417 |
| SMART | SM00456 | ww_5 | 21 | 52 | 6.5E-5 | IPR001202 |
| SMART | SM00487 | ultradead3 | 602 | 816 | 7.3E-58 | IPR014001 |
| SMART | SM00490 | helicmild6 | 853 | 933 | 9.7E-33 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 583 | 611 | 10.840833 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 614 | 799 | 28.906015 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 52 | 10.915601 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 828 | 972 | 25.143387 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 50 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 745 | 753 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1218 | 1240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1326 | 1345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1297 | 1365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1153 | 1213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1241 | 1259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 223 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_047056864.1 | DEAD-box ATP-dependent RNA helicase 40-like [Lolium rigidum] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0Q3FTV5 | DEAD-box ATP-dependent RNA helicase 40 OS=Brachypodium distachyon OX=15368 GN=100835845 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology