Basic Information
Locus ID:
Pt_Chr0205402
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 185154448 | 185165740 | + | Pt_Chr0205402 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 112,628.77 Da | 47.84 | 92.51 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13136 | MATE_DinF_like | 617 | 1040 | 1.77807E-104 | IPR044644 |
| Pfam | PF01554 | MatE | 624 | 789 | 9.8E-10 | IPR002528 |
| Pfam | PF01554 | MatE | 859 | 1002 | 1.1E-12 | IPR002528 |
| Pfam | PF13639 | Ring finger domain | 462 | 502 | 2.8E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 455 | 502 | 1.41E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 427 | 508 | 3.5E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 463 | 503 | 7.0E-5 | IPR001841 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 624 | 1020 | 6.1E-78 | IPR002528 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 463 | 502 | 11.176261 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 591 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 548 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38380.5 | - | 0 |
| RefSeq | XP_047054082.1 | protein DETOXIFICATION 45, chloroplastic isoform X1 [Lolium rigidum] | 0 |
| Q9SVE7 | Protein DETOXIFICATION 45, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DTX45 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8I6XZR9 | Protein DETOXIFICATION OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology