Basic Information
Locus ID:
Pt_Chr0205335
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 183340965 | 183365821 | - | Pt_Chr0205335 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 42,665.00 Da | 44.48 | 78.97 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 30 | 131 | 2.13716E-21 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 189 | 242 | 1.6E-7 | IPR000858 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 240 | 343 | 1.3E-7 | IPR001245 |
| Pfam | PF01453 | D-mannose binding lectin | 59 | 157 | 5.2E-24 | IPR001480 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 234 | 372 | 1.63E-17 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 59 | 162 | 1.1E-22 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 214 | 355 | 1.2E-22 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 20 | 129 | 8.0E-12 | IPR036426 |
| SMART | SM00108 | blect_4 | 13 | 131 | 2.5E-20 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 13 | 134 | 14.000748 | IPR001480 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.2 | - | 0 |
| RefSeq | XP_047070220.1 | receptor-like serine/threonine-protein kinase SD1-8 [Lolium rigidum] | 0 |
| O81905 | Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452Z033 | Receptor-like serine/threonine-protein kinase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0102630.1 |
| Poaceae | Oryza coarctata | 1 | Oco13G005340 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g20610.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205335 |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G397100, Tel2E01G120500, Tel2E01G120600 ... |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G281900.1, TraesCSU02G212500.1 |