Basic Information
Locus ID:
Pt_Chr0205303
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 182567244 | 182569524 | + | Pt_Chr0205303 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 49,618.57 Da | 44.12 | 104.71 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 160 | 332 | 7.46E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 85 | 277 | 2.2E-7 | IPR032675 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29420.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_047055285.1 | F-box/LRR-repeat protein At4g29420-like isoform X3 [Lolium rigidum] | 0 |
| Q9M0E1 | F-box/LRR-repeat protein At4g29420 OS=Arabidopsis thaliana OX=3702 GN=At4g29420 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6XQT4 | F-box domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32946 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11064 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015459 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011162 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42919, Sgl42920, Sgl47711, Sgl47712 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000033221, gene:ENSEOMG00000044927 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0015280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30257800 |
| Apiaceae | Apium graveolens | 2 | Ag8G00305, Ag8G00306 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G014840 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702010 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2121.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G06069, Ftri7G05166 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025196m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27300.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g008200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0898 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0929 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g14830 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003389, Pov_00023080, Pov_00029699 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17036, Lb3G17040 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.320, BH02.349, BH06.2888, CH01.639 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0013050, gene-QOZ80_1BG0061740 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0236350.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_050142, gene-QYE76_050680, gene-QYE76_050681 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G004060, Oco02G004090 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g09740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G031500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205303, Pt_Chr0700275 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G020930, Chr05G011710 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G184800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG013070, gene_TRIDC3BG017540 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G106200.1, TraesCS3A02G106300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb121140_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13326 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7798 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g05880 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1860 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25723 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5097 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4643 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1058 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001179 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1153 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8051 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1554 |