Basic Information
Locus ID:
Pt_Chr0205206
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 179323902 | 179336674 | + | Pt_Chr0205206 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 152,480.08 Da | 44.60 | 97.78 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18052 | Rx N-terminal domain | 55 | 132 | 2.3E-9 | IPR041118 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1039 | 1298 | 4.9E-13 | IPR001245 |
| Pfam | PF00931 | NB-ARC domain | 224 | 457 | 3.4E-37 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 211 | 477 | 1.92E-52 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 542 | 899 | 4.76E-15 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1003 | 1300 | 2.42E-29 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1112 | 1311 | 6.9E-20 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 996 | 1107 | 1.0E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 589 | 985 | 5.0E-12 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 375 | 461 | 8.0E-9 | IPR042197 |
| Gene3D | G3DSA:1.20.5.4130 | - | 54 | 169 | 3.2E-14 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 462 | 554 | 2.0E-10 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 208 | 367 | 1.1E-28 | IPR027417 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1023 | 1303 | 13.799745 | IPR000719 |
| PRINTS | PR00364 | Disease resistance protein signature | 411 | 425 | 8.5E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 314 | 328 | 8.5E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 665 | 681 | 8.5E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 242 | 257 | 8.5E-12 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05940.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_047059925.1 | disease resistance protein RGA5-like isoform X1 [Lolium rigidum] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6UBM4 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH02.2484 |
| Poaceae | Hordeum vulgare | 8 | HORVU.MOREX.r3.5HG0534540.1, HORVU.MOREX.r3.6HG0550480.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_006977, gene-QYE76_048723, gene-QYE76_048728 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os10g22484.1 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205164, Pt_Chr0205206 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G1030200, Tel7E01G023300, Tel7E01G062300 |
| Poaceae | Triticum dicoccoides | 10 | gene_TRIDC4AG067680, gene_TRIDC4AG068620 ... |
| Poaceae | Triticum aestivum | 22 | TraesCS1D02G381400.1, TraesCS2D02G511600.2 ... |