Basic Information
Locus ID:
Pt_Chr0205183
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA binding (RRM RBD RNP motifs) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 178752065 | 178759598 | + | Pt_Chr0205183 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 104,999.87 Da | 54.07 | 67.02 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16618 | mRING-HC-C4C4_CNOT4 | 133 | 176 | 3.54855E-18 | IPR039515 |
| CDD | cd12438 | RRM_CNOT4 | 217 | 313 | 5.03063E-44 | IPR034261 |
| Pfam | PF14570 | RING/Ubox like zinc-binding domain | 133 | 173 | 5.5E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 126 | 168 | 6.0E-8 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 220 | 318 | 3.7E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 223 | 301 | 1.3E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 199 | 1.4E-14 | IPR013083 |
| SMART | SM00361 | rrm2_1 | 223 | 301 | 1.1E-11 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 222 | 305 | 11.042404 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 129 | - | - |
| Coils | Coil | Coil | 177 | 197 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45630.1 | RNA binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_047058784.1 | uncharacterized protein LOC124665415 [Lolium rigidum] | 0 |
| O95628 | CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A453EFA3 | RRM domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.235, BH02.242, CH02.249 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0246290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051130 |
| Poaceae | Oryza coarctata | 1 | Oco02G004820 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G021800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205133, Pt_Chr0205183 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028050, Chr05G005750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G256800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG018050, gene_TRIDC3BG023800 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G133600.1, TraesCS3B02G165900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120310_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7259 |