Basic Information
Locus ID:
Pt_Chr0205133
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA binding (RRM RBD RNP motifs) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 177466823 | 177474094 | + | Pt_Chr0205133 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 95,732.78 Da | 55.65 | 70.73 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12438 | RRM_CNOT4 | 117 | 213 | 1.28555E-43 | IPR034261 |
| CDD | cd16618 | mRING-HC-C4C4_CNOT4 | 9 | 58 | 7.91091E-23 | IPR039515 |
| Pfam | PF14570 | RING/Ubox like zinc-binding domain | 9 | 60 | 3.5E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 67 | 7.07E-13 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 120 | 218 | 3.29E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 76 | 7.4E-21 | IPR013083 |
| Gene3D | G3DSA:3.30.70.330 | - | 123 | 201 | 1.1E-20 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 123 | 201 | 1.1E-11 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 122 | 205 | 11.042404 | IPR000504 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 9 | 57 | 9.184606 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 409 | - | - |
| Coils | Coil | Coil | 77 | 97 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60170.2 | RNA binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_047058784.1 | uncharacterized protein LOC124665415 [Lolium rigidum] | 0 |
| O95628 | CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A3B6ECJ7 | CCR4-NOT transcription complex subunit 4 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.235, BH02.242, CH02.249 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0246290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051130 |
| Poaceae | Oryza coarctata | 1 | Oco02G004820 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G021800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205133, Pt_Chr0205183 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028050, Chr05G005750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G256800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG018050, gene_TRIDC3BG023800 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G133600.1, TraesCS3B02G165900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120310_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7259 |