Basic Information
Locus ID:
Pt_Chr0205073
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 175728382 | 175734286 | + | Pt_Chr0205073 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.59 | 93,434.54 Da | 45.86 | 88.76 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 566 | 699 | 1.36313E-22 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 568 | 698 | 1.7E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 722 | 762 | 1.0E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 528 | 798 | 3.88E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 527 | 807 | 1.2E-97 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 700 | 802 | 1.2E-97 | - |
| SMART | SM00382 | AAA_5 | 564 | 701 | 5.3E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 671 | 690 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 232 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_037404979.1 | uncharacterized protein LOC119267652 [Triticum dicoccoides] | 0 |
| Q9P7J5 | Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC24B10.10c PE=3 SV=1 | 0 | |
| TrEMBL | A0A8R7THT3 | AAA domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology