Basic Information
Locus ID:
Pt_Chr0204954
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Got1/Sft2-like family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 172179429 | 172186112 | - | Pt_Chr0204954 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 48,286.00 Da | 36.35 | 98.05 | 0.15 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61730.1 | reduced male fertility. Encodes a nuclear localized F-box protein that is involved in tapetal layer degeneration and pollen development. Interacts with ASK1 and that interaction is mediated by the F-box domain. | 0 |
| RefSeq | XP_047061451.1 | probable F-box protein At3g61730 [Lolium rigidum] | 0 |
| Q9M365 | Probable F-box protein At3g61730 OS=Arabidopsis thaliana OX=3702 GN=RMF PE=1 SV=2 | 0 | |
| TrEMBL | M8BW66 | ANK_REP_REGION domain-containing protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23547 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3960, Sbi_jg49173 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6070 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000577 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10914, Sgl16268 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015309, gene:ENSEOMG00000034785 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0002120, CQ.Regalona.r1.1AG0003620 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005770 |
| Apiaceae | Apium graveolens | 3 | Ag11G04909, Ag6G01553, Ag8G01101 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G002940 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703047, gene-LOC120108259 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2600.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G13570 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G61730.1, AT3G62500.1, AT5G36000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006430m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g01640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g052820.2N, BniB06g061850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1267 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1308 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g01720 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g18050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.707 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016587, Pov_00016588 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03662 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.176, AH02.532, BH02.168, CH02.194, CH05.1612 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0001640, gene-QOZ80_1AG0007050 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0246620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051354 |
| Poaceae | Oryza coarctata | 2 | Oco01G005200, Oco02G005250 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11990.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G015000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204954, Pt_Chr0206802 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G000210, Chr08G000240, Chr14G016870, Chr21G015800 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G260200, Tel4E01G032500, Tel4E01G284600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1BG032410, gene_TRIDC3AG019130 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G144000.1, TraesCS3B02G170600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb119810_P001, Zm00001eb308970_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24329 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9552 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1277, evm.TU.LG24.1276 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc09g09100, gene.Posoc09g09180, gene.Posoc09g09190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.602 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21615 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.207 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017768 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1704 |
| Salicaceae | Populus euphratica | 2 | populus_peu27565, populus_peu31562 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599972 |
| Solanaceae | Solanum chilense | 1 | SOLCI004966500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008268 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_732 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1954 |
| Zosteraceae | Zostera marina | 1 | Zosma05g06460.v3.1 |