halophFGD

Basic Information

Locus ID: Pt_Chr0204871

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr02	169899413	169908450	+	Pt_Chr0204871

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.80	148,671.00 Da	50.56	94.13	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16664	RING-Ubox_PUB	413	455	7.60325E-20	-
Pfam	PF00400	WD domain, G-beta repeat	1142	1172	0.0035	IPR001680
Pfam	PF04564	U-box domain	410	480	1.4E-14	IPR003613
SUPERFAMILY	SSF57850	RING/U-box	407	481	4.04E-22	-
SUPERFAMILY	SSF48371	ARM repeat	572	1075	1.03E-10	IPR016024
SUPERFAMILY	SSF50978	WD40 repeat-like	1087	1385	8.63E-38	IPR036322
Gene3D	G3DSA:2.130.10.10	-	1073	1205	1.0E-14	IPR015943
Gene3D	G3DSA:1.25.10.10	-	663	898	1.9E-5	IPR011989
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	407	483	1.5E-23	IPR013083
Gene3D	G3DSA:2.130.10.10	-	1206	1386	4.3E-19	IPR015943
SMART	SM00320	WD40_4	1134	1173	6.2E-6	IPR001680
SMART	SM00320	WD40_4	1216	1252	66.0	IPR001680
SMART	SM00320	WD40_4	1304	1340	20.0	IPR001680
SMART	SM00320	WD40_4	1093	1129	0.56	IPR001680
SMART	SM00320	WD40_4	1343	1384	0.73	IPR001680
SMART	SM00504	Ubox_2	412	476	3.8E-23	IPR003613
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	1141	1175	10.548323	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	1141	1175	12.680634	IPR001680
ProSiteProfiles	PS51698	U-box domain profile.	408	483	35.030739	IPR003613
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	1359	1386	9.639578	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	1352	1386	9.256512	-
MobiDBLite	mobidb-lite	consensus disorder prediction	484	507	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	353	375	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	390	411	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	389	411	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	312	326	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	248	376	-	-

Gene Ontology

Biological Process:

GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity) GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G06880.2	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_047052821.1	putative E3 ubiquitin-protein ligase LIN [Lolium rigidum]
Swiss-Prot	C6L7U1	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2
TrEMBL	A0A3B6FNM7	RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg11768, jg11769, jg11770, jg11771, jg31633, jg31634
Anacardiaceae	Pistacia vera	2	pistato.v30049320, pistato.v30256780
Apiaceae	Apium graveolens	3	Ag2G02459, Ag3G02527, Ag8G00225
Arecaceae	Cocos nucifera	2	COCNU_03G011900, COCNU_07G002000
Arecaceae	Phoenix dactylifera	2	gene-LOC103702597, gene-LOC103706139
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1751.V1.1, AsparagusV1_03.2268.V1.1 ... AsparagusV1_04.824.V1.1
Asteraceae	Flaveria trinervia	3	Ftri4G07535, Ftri7G18227, Ftri8G01620
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G0877, Ceq06G1516
Casuarinaceae	Casuarina glauca	2	Cgl03G0956, Cgl06G1574
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-141, nbisL1-mrna-8648
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG06.710, evm.TU.LG07.1111
Plantaginaceae	Plantago ovata	2	Pov_00003863, Pov_00020671
Poaceae	Echinochloa crus-galli	4	AH02.91, BH01.509, BH02.80, CH02.102
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0000840, gene-QOZ80_1BG0049330
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0248980.1
Poaceae	Lolium multiflorum	3	gene-QYE76_051444, gene-QYE76_051560, gene-QYE76_051566
Poaceae	Oryza coarctata	2	Oco01G005770, Oco02G005870
Poaceae	Oryza sativa	1	LOC_Os01g12930.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G006500
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0204871
Poaceae	Sporobolus alterniflorus	1	Chr21G016220
Poaceae	Thinopyrum elongatum	1	Tel3E01G274000
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG020830, gene_TRIDC3BG031130
Poaceae	Triticum aestivum	3	TraesCS3A02G154900.1, TraesCS3B02G181200.1 ... TraesCS3D02G162400.1
Poaceae	Zea mays	1	Zm00001eb119290_P001
Poaceae	Zoysia japonica	5	nbis-gene-24273, nbis-gene-24274, nbis-gene-32721 ... nbis-gene-32722, nbis-gene-32723
Poaceae	Zoysia macrostachya	2	Zma_g7183, Zma_g9505
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.437, evm.TU.Scaffold_4_RagTag.1931 ... evm.TU.Scaffold_7_RagTag.428
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-13099, nbisL1-mrna-16388, nbisL1-mrna-25645
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-12295, nbisL1-mrna-6585
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-13044, nbisL1-mrna-13045, nbisL1-mrna-16830 ... nbisL1-mrna-16831
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000018l.158, add.evm.TU.utg000033l.95 ... evm.TU.utg000002l.484, evm.TU.utg000008l.1103
Rhizophoraceae	Kandelia obovata	3	Maker00000143, Maker00011993, Maker00014879
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-20232, nbisL1-mrna-23194
Salicaceae	Populus euphratica	5	populus_peu15357, populus_peu21947, populus_peu33000 ... populus_peu33001, populus_peu33002
Solanaceae	Lycium barbarum	2	gene-LOC132603413, gene-LOC132622109
Solanaceae	Solanum pennellii	3	gene-LOC107017250, gene-LOC107025502, gene-LOC114077896