Basic Information
Locus ID:
Pt_Chr0204830
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 168586379 | 168588861 | + | Pt_Chr0204830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 36,626.41 Da | 42.56 | 69.48 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 183 | 311 | 1.12362E-68 | - |
| CDD | cd16571 | RING-HC_SIAHs | 67 | 105 | 3.06785E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 111 | 310 | 5.7E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 122 | 314 | 7.19E-49 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 67 | 110 | 3.53E-6 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 181 | 310 | 3.7E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 177 | 3.9E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 111 | 1.9E-6 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 122 | 182 | 14.228174 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 69 | 105 | 9.464913 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_044975548.1 | E3 ubiquitin-protein ligase SINAT5-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I7B9L0 | RING-type E3 ubiquitin transferase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology