Basic Information
Locus ID:
Pt_Chr0204765
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 166745837 | 166764291 | - | Pt_Chr0204765 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 139,106.44 Da | 48.51 | 83.96 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 473 | 502 | 1.1E-5 | IPR001810 |
| Pfam | PF00646 | F-box domain | 868 | 903 | 3.0E-4 | IPR001810 |
| Pfam | PF00646 | F-box domain | 46 | 73 | 0.003 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 858 | 903 | 2.09E-7 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 468 | 501 | 5.1E-7 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 29 | 73 | 3.01E-6 | IPR036047 |
| SUPERFAMILY | SSF101898 | NHL repeat | 156 | 403 | 5.23E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 466 | 503 | 2.0E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 862 | 906 | 5.9E-6 | - |
| SMART | SM00256 | fbox_2 | 468 | 507 | 2.6 | IPR001810 |
| SMART | SM00256 | fbox_2 | 42 | 82 | 4.5 | IPR001810 |
| SMART | SM00256 | fbox_2 | 870 | 910 | 1.7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 864 | 919 | 8.729132 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047046701.1 | uncharacterized protein LOC124651702 [Lolium rigidum] | 0 |
| TrEMBL | A0A0E0EPY0 | F-box domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH03.1369, AH03.1375, BH03.1480, BH03.1481, BH03.1484 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5BG0424490, gene-QOZ80_6AG0522300 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.5HG0470290.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_004102, gene-QYE76_004104, gene-QYE76_004105 ... |
| Poaceae | Oryza coarctata | 1 | Oco17G001030 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g08550.1, LOC_Os09g08620.1 |
| Poaceae | Puccinellia tenuiflora | 9 | Pt_Chr0204762, Pt_Chr0204764, Pt_Chr0204765, Pt_Chr0204769 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G003490, Chr11G015420, Chr11G015430, Chr11G015440 |
| Poaceae | Thinopyrum elongatum | 6 | Tel5E01G263400, Tel5E01G289600, Tel5E01G289900 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC5AG025450, gene_TRIDC5AG027990 ... |
| Poaceae | Triticum aestivum | 17 | TraesCS3D02G377000.1.cds1, TraesCS5A02G152500.1.cds1 ... |