Basic Information
Locus ID:
Pt_Chr0204630
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 161627044 | 161634620 | - | Pt_Chr0204630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 88,957.32 Da | 44.37 | 66.43 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 68 | 239 | 3.25E-5 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 570 | 617 | 3.08E-8 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 570 | 618 | 4.6E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 733 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 807 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 568 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_037451905.1 | neurofilament heavy polypeptide-like [Triticum dicoccoides] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A453P2V3 | Tudor domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology