Basic Information
Locus ID:
Pt_Chr0204522
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 158036753 | 158045020 | + | Pt_Chr0204522 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 61,711.33 Da | 51.21 | 58.84 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 131 | 181 | 3.58104E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 201 | 262 | 9.5E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 212 | 4.71E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 522 | 548 | 2.51E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 201 | 269 | 7.59E-12 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 278 | 477 | 6.2E-50 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 520 | 551 | 3.3E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 212 | 1.1E-17 | IPR013083 |
| SMART | SM00547 | zf_4 | 524 | 548 | 9.2E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 200 | 262 | 6.8E-24 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 127 | 357 | 30.293003 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 131 | 177 | 8.742016 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 526 | 545 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 41 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_037447341.1 | probable E3 ubiquitin-protein ligase ARI8 [Triticum dicoccoides] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PKL5 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology