Basic Information
Locus ID:
Pt_Chr0204385
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 153411117 | 153415445 | + | Pt_Chr0204385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 80,817.99 Da | 35.13 | 90.04 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 350 | 655 | 2.98653E-148 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 40 | 333 | 3.89097E-169 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 355 | 651 | 3.9E-44 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 349 | 655 | 2.25E-47 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 39 | 333 | 1.52E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 39 | 334 | 9.7E-34 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 349 | 656 | 1.9E-46 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 40 | 334 | 29.977037 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 350 | 656 | 37.122726 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_047082135.1 | glycerophosphodiester phosphodiesterase GDPDL4-like [Lolium rigidum] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A3B6PJW8 | glycerophosphodiester phosphodiesterase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology